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… the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy (DOE) Joint … , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI …

… other oceans. That zinc turns out to be extremely important for polar phytoplankton.  After peering into the function … collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom … his team then linked those species-level observations with data on microalgal communities across different ocean …

… increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able …

… participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural …

Every year, the JGI sequences around 35,000 samples — from plants, algae, …

… sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. A second approach … please visit  energy.gov/science/office-science . … IMG/VR data portal …

… diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and … National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a … be specific to species or groups of species.  The genome data also revealed that green millet was introduced into the …

Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton … , both faculty investigators at the HudsonAlpha Institute for Biotechnology. “The goal has been for all this new … D are available for comparative analysis on JGI’s plant data portal  Phytozome , which is a community repository and …

… with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides …

… his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a … the JGI’s primary point of contact for all High-Throughput Data Generation Platforms (Sequencing, Single Cell, DNA … Program Defining the vast landscape of gene regulatory sequences in the human genome. Understanding how variation …

… relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … called crassulacean acid metabolism, or CAM — that’s C-A-M, for short — helps plants that have it lose less water in a … We all know plants take up water through their roots. But for them to be able to pull that water through the whole …