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Biotech Partners
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Finding the Fermenters
… the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … browser that allows other researchers to study the genomes and predict the metabolic abilities of these … Explorer ( GitHub ) with a series of large datasets. One test was to predict traits of more than 400 cultured …
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Building Sphagnum Genomic Resources
… model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different … JGI (CSP 605), the German Research Foundation (DFG, PE 2147/1-1), the European Union (FP7-People-2013-CIG, Grant No …
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Arachnid relationships based on mitochondrial genomes: Asymmetric nucleotide and amino acid bias affects phylogenetic analyses
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Genome, transcriptome and secretome analyses of the antagonistic, yeast-like fungus Aureobasidium pullulans to identify potential biocontrol genes
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Adaptations to marine versus terrestrial low temperature environments as revealed by comparative genomic analyses of the genus Psychrobacter
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Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits
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Plant-Microbial Interactions Group
… rhizobacterium (PGPR) Pseudomonas simiae WCS417. One suggested function of these phage genes is the … experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this …
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Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation
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JGI@25: From Life at the Extremes to Editing Genomes
Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence Berkeley National … The collaboration has resulted in several papers, including one in 2018 on the discovery of miniature CRISPR-associated … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron …
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Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows
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Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea
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