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Axel Visel
… and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max … University of California, Merced. Dr. Visel also served as JGI Interim Director from March 2016 – March 2017.   … Axel Visel is the JGI's Deputy for Science Programs. Click to learn more about …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge … and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and …
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VEGA Symposium
… Students & Postdocs – $200 Regular Rates (begin September 19, 2026) General & Berkeley Lab Attendee – $300 Students & … Applications (VEGA) symposium will take place November 18-19, 2026 on the UC Berkeley campus. Organized every two years … MLK Building, in the East Pauley Ballroom, November 18–19, 2026. The poster session will be held on Nov. 18 in the …
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An Integrated Dataset to Understand Ecosystem Interaction
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic profiles — … The work builds off a longstanding partnership between the JGI and Oak Ridge National Laboratory, dating back to the …
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Biodesign
… assembly and analysis Overview of biodesign products The JGI Biodesign platform enables users to validate hypotheses … develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program.    Representative software … and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of … is still in development and not available for download. 9.  Q: Can I upload my own sequences? A: We can add external … search for genes/proteins by their commonly used names in publications? e.g. erg-1 (instead of the Gene ID etc., which …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Natalia Ivanova, senior author of the study and head of the JGI’s Microbiome Annotation Group. Many of these bacterial … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Sequencing Technologies & Products
… Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing … with Science Programs and Operations teams to enable the JGI’s focus on expanding molecular capabilities and … capabilities.    Overview of sequencing products The JGI operates highly scaled short- and long-read sequencing …
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Nick Everson
… Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human … and Administration departments. He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all … Deputy of Operations provides oversight and leadership of JGI operations infrastructure, including space and …
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