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DNA Synthesis Program
… Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, advancing the development of biofuels, biochemicals and other bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at … The JGI consists of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, … from plants, fungi, algae, non-medical microbes, microbial communities, and other relevant organisms. We …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from additional parents or …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … what falls within that single beam. When it comes to microbial communities, scientists have historically been … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… metabolites for multiple applications. The planet’s microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers around the … approaches applied to relatively tractable samples like lakes and rivers could help fill in the gaps,” she added. …
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The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and expertise. These … data life cycle, and embeds metadata and its curation in our core processes. This allows us to provide diverse …
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A survey of computational approaches for characterizing microbial interactions in microbial mats
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate … adapted to extreme conditions studied through the Antarctic Lake project. The model’s training also included early … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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The microbial ecology of permafrost
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