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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  … ecologist and JGI user Trina McMahon has been sampling microbes at Lake Mendota, which borders the University of … Mendota data set, illuminating not just the highly-abundant microbes we expect to see, but also low-abundance …
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Homoeolog expression divergence contributes to time of day changes in transcriptomic and glucosinolate responses to prolonged water limitation in Brassica napus
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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest … dominated Copper River Delta. They’re looking at how the microbes in these high latitude wetlands, such as the Copper … colleagues are studying how chronic warming is altering how microbes interact with their environment, potentially …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes … has identified the major metabolic roles of constituent microbes, publishing their findings in the  Proceedings of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help … but they’re not always immediately apparent. Similarly, the microbes found in plant roots may have unknown roles. Some … fungi must be kept in check by the host and other microbes not to impede host health. For JGI Fungal Program …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change impact on … predictive models on how climate change may impact marine microbes and by extension, the ocean’s capacity to act as a … saw populations shift. Smaller picoplankton and free-living microbes that can fix carbon dioxide replaced organic matter …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … more about the patterns and functions of environmental microbes. Researchers can use the tool to correlate protein … measure the collection of the microbiome’s genetic makeup. Microbes have specific tetranucleotide frequencies, and an …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been important in early … conditions. Additionally, high-temperature (thermophilic) microbes are of interest for their potential use in number … may have been important to the early evolution of these microbes. …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important role in the cycling of nutrients in these systems.” -Mike …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms … This research was supported in part by the Allen Distinguished Investigator Program, …
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Tanja Woyke Elected to American Academy of Microbiology
… of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for AAM Fellows is based on … methods to access the genetic material of uncultivated microbes and link their genomes to the roles they play in …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for …
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