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Individual genome assembly from complex community short-read metagenomic datasets
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Persistent memory as an effective alternative to random access memory in metagenome assembly
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Metagenomics untangles potential adaptations of Antarctic endolithic bacteria at the fringe of habitability
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An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments
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Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake
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NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
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Metagenomics Reveal Dynamic Coastal Ocean Reservoir of Antibiotic Resistance Genes
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Depth-resolved paired metagenomes and metatranscriptomes from the Lake Erie ‘dead zone’
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … glasses, or a cane, but only Waldo will have all of these features. As described July 22, 2019, in  Nature … use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … Audio Two special days occur in April: the 50th celebration of Earth Day on April 22, and DNA Day on April 25. Since … stressors, um, alter microbial biomass and then what the consequences are for the ecosystem. ALISON:  So, Ed is …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited … Annual Meeting, Holmes discussed how to use genomics and metagenomics to better understand what is called the “virus … random,” Holmes said. Given the vast unknowns contained in metagenomic data sets, Holmes and his group set out to use …
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