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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, … darwinii are the others. All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in size, and are hybrids comprised of cotton A and cotton D genomes. A multi-institutional team including researchers at …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … and developed new tools to map that soil RNA to fungal genomes.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Eelgrass Proves to Be Much Younger Than We Thought
… form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the ancestor to eelgrass underwent a whole genome duplication event, doubling all of its chromosomes.  … a predictable rate, enabling researchers to use the genome assembly to calibrate their genetic clock.  Various …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put … The next 3 episodes are the story behind that giant assembly from Lake Mendota. In this episode: the software evolution that made metagenome assemblies like this possible. …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone … the goal is to create an entirely human-generated yeast genome. …
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Micro-Scale Applications Group
… technology in order to enhance the quality of single-cell genomes and directly link functional information with … DNA amplification, and sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling … To provide additional functional insights into microbial genomes, the JGI now uses laser microdissection to …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a …
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Building Sphagnum Genomic Resources
… researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different … – Sphagnum fallax and S. magellanicum. The draft genome for  S. fallax is already available on the  JGI plant portal Phytozome , and the S. magellanicum genome is currently being assembled. These resources would …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … high-quality reference sequence of the complex switchgrass genome. The reference genome built off more than a decade of work; as sequencing technologies advanced, assembly and annotation of the genome sequence improved in …
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental … In part because of this evolutionary diversity, algal genomes can be incredibly complex and difficult to sequence …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for …
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