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Understanding Wildfire Recovery, Starting in Soil
… in Nature Microbiology , went a step further, using both DNA and messenger RNA (mRNA) sequencing to identify those … harbored fungal genomes, including a novel Leotiomycetes species and Coniochaeata lignaria , and both DNA and RNA … questions about what the soil microbiome looks like over longer times post-fire, and how long it takes a forest to …
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JGI@25: Building a Better Bean
… peanuts, black-eyed peas, soybeans and chickpeas. While no longer under the umbrella of the JGI, McClean and Schmutz … unlocking the powers of the bean. Though the JGI no longer works on food crops specifically, “[At the JGI] we do … Schmutz explained, meaning the plant’s reduced genetic diversity makes it easier to genetically manipulate. One …
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Cultivating Symbiotic Antarctic Microbes
… Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The … the Nha-C cells were interacting with another abundant species in the enrichment cultures,  Hrr. lacusprofundi … region in the SPEARE proteins appears to be involved in DNA degradation, and these proteins may be directly involved …
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Mapping the Earth’s Hidden Fungal Kingdom
… organisms have diversified into an estimated 2–6 million species — dwarfing the diversity of plants. To put this … Reviews Microbiology of nearly 2,000 of these genomes reveals just how much we still have to discover about … plant and animal genomes can sprawl across billions of DNA base pairs, most fungal genomes contain fewer than 50 …
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Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… the tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein … Those similarities, based on their ratios of small DNA sequence fragments called tetranucleotides, are a way to …
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First Monoploid Reference Sequence of Sugarcane
… for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of chromosomes, one … (CIRAD), who worked on sequencing and assembling fragments of sugarcane chromosomes into the first monoploid … artificial chromosomes (BACs), vectors that can hold large DNA segments such as an entire sugarcane gene and its …
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PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution
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Trichodesmium genome maintains abundant, widespread noncoding DNA in situ, despite oligotrophic lifestyle
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Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies
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Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
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Marine DNA methylation patterns are associated with microbial community composition and inform virus-host dynamics
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