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When “The Blob” Made It Hotter Under the Water
… on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … from the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The Blob, researchers developed a preliminary model of how marine microbial communities are affected by …
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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus
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Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
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Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass
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The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum
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Integrating Microbial Community Data Into an Ecosystem‐Scale Model to Predict Litter Decomposition in the Face of Climate Change
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Partners
… science and serve as impact multipliers . The JGI has a long-term partnership with the HudsonAlpha Institute for … and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA extractions to support … DOE computational facilities (e.g., the National Energy Research Scientific Computing Center (NERSC) and data …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest … and cotton D genomes. A multi-institutional team including researchers at the U.S. Department of Energy (DOE) Joint … is almost entirely made up of cellulose and it is a fiber model to understand the molecular development of cellulose. …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… 5,000 times bigger than most bacteria. To put it into context, it would be like a human encountering another human … National Laboratory (Berkeley Lab) and the Laboratory for Research in Complex Systems (LRC) in Menlo Park, Calif. In … Université des Antilles, described the morphological and genomic features of this giant filamentous bacterium, along …
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Trent Northen
… Northen has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental research, including through the Joint BioEnergy … application of advanced mass spectrometry approaches and model laboratory ecosystems (EcoFABs). …
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Examples: Successful LOIs & Submissions
… Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures …
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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