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Boosting Small Molecule Production in Super “Soup”
… from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: … smoothly. As reported August 26, 2021, in Nature Communications , researchers led by Hal Alper at The University of … Michael Jewett of Northwestern University describe a two-pronged approach that starts with engineered yeast cells but …
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Boosting Small Molecule Production in Super “Soup”
… from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Taking Stock of the Known and Unknown Microbial Space
… of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the … the past three decades, their study assesses what fraction of the microbial diversity we know about, and proposes a … computationally derived MAGs have been a revolutionary tool for microbiology, it's a call to balance,” added …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … v4 at the 2022 VEGA meeting below). Another JGI-developed tool, CheckV, assesses viral genomes, and grades their …
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Introducing New Members of the JGI User Executive Committee
… Committee (UEC) – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons for wishing to serve on the UEC. For microbial ecologist …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  The Impact Chloroflexota are bacteria … Berkeley National Laboratory, has unveiled these motility tools in hot spring  Chloroflexota .  Ocean-dwelling  … , and  https://doi.org/10.46936/10.25585/60007554 ) conducted by the U.S. Department of Energy Joint Genome …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and … the PI. We currently use the ‘Base Modification Analysis’ tool within PacBio SMRT link, which works well for 6mA and … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new technology development and JGI user … experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in … also performs ‘proof-of principle’ research projects to demonstrate new genomic capabilities. Our group also performs …
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Scaling Up Existing Skill Sets
… opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer … the door for me in the sense that I learned many different tools in bioinformatics research. Also, it consolidated my … has inspired me to incorporate powerful bioinformatic tools to my research interests during graduate school and …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in many regions due to more extreme weather events such as heat waves, … D.C.-D., R.O., J.W.T., J.D., J.P.V., P.G.L., and E.P.); Gordon and Betty Moore Foundation Grant GBMF3834 and Alfred P. …
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Introducing New Members of the JGI User Executive Committee
… User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell University, and Jana U’Ren (pronounced “you-wren”) of the University of Arizona! They join nine other JGI users already serving on the …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals have been  … of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). The accepted proposals come … thousand Actinobacteria strains and then use computational tools to analyze biosynthetic gene clusters and then develop …
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