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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … in 2018. She selected one of the projects posted by JGI fungal researchers, Igor Grigoriev and Asaf Salamov, and … “Fungi are the masters of adaptation,” Wint explained. The fungal kingdom contains over one million different species …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … dataset was particularly important for characterizing fungal genes, because, unlike bacteria, they often carry … sequences, as well as individual reference fungal genome sequences assembled as part of its 1000 Fungal …
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MycoCosm Tutorial
… Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling … to look at gene expression in both plant cells and fungal cells. Using a technique called single nuclei RNA … captured molecular information from both plant cells and fungal cells. “Because this technology relies on just …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … U.S. Not only does it pair with maize, the dominant source of bioethanol, in crop rotation, but soybean ( Glycine max ) …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … Kamel, A Comparative Analysis of Metabolic Pathways in Fungal Pathogens Shayna Bennett and mentor Robert Bowers, … Tools and Exploring Novel BGC Detection Techniques on Fungal Genomes Video Transcript: Emerald Nash : What I’m …
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Gut Fungi: Unexpected Source of Novel Chemicals
… The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this … , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of …
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that there is no shortage of fungal genomes anymore, but their functional interpretation …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … mean that the flagellum was retained in some terrestrial fungal lineages for an extended period of time, which would …
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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly … to: Project Manager Kerrie Barry, Cross-Field Category Fungal and Algal Program head Igor Grigoriev , Plant & … that presented the first large analysis of an Aspergillus fungal subgroup, section Nigri. Aspergillus fungi play …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and … for anaerobic fungi . Eventually, it’s possible that fungal communities — or enzymes from fungal communities — could pave the way for many different …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using … in every corn variety and protect maize by fending off fungal and microbial infections. Scientists had assumed that … to home in on precise biosynthetic enzymes elicited by fungal infection. They analyzed differences among mutant …
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