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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE … users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We …
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How Maize Makes An Antibiotic Cocktail
Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The … genes were synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … Science Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  …
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … felling their research problem: at a genetic level, how does  Y. lipolytica work? The project was a … work was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and MB) and NSF  1706545 (IW). HA and JW …
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Introducing New Members of the JGI User Executive Committee
… – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here to view the full roster of members. … Each of the researchers had their own reasons for wishing to serve on the UEC. For microbial ecologist Gilbert at …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … river microbiome datasets are also available through the DOE Systems Biology Knowledgebase, allowing researchers to … not only how researchers can successfully partner with DOE user facilities and resources on such large-scale …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in … science mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
Laboratory (Berkeley Lab) hosted a pitch event promoting fully-supported summer research collaborations through the U.S. Department of Energy (DOE)’s Visiting Faculty Program (VFP) . The VFP is a summer … for the summer term (May through August) and selected projects will receive stipend and travel expenses, both for …
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Events
…  Learn about meetings the JGI is hosting:   … New Lineages of Life (NeLLi) … Viral EcoGenomics & Applications …
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The JGI Data Portal: Improving User Experience
… human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI … … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence … is committed to advancing genomics in support of DOE missions related to clean energy generation and …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … of genomes from uncultivated microbes (Nature 2019). Other projects in the group include the sequencing and comparative …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … Centralized databases with large-scale transcriptome projects such as Expression Atlas and PPRD could help with … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at the University of Texas at Austin, … Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student Research (SCGSR) … worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s research builds on that. “The …
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