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David Goodstein
With a background in experimental and computational surface physics, Dr. … in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative genomic … NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities … … Adaptive strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Computational Sieves to Filter Sequences There are more microbes on the planet than particles in a handful of dirt, … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses … energy generation and environmental characterization and cleanup. The JGI provides integrated high-throughput …
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Rare earth element alcohol dehydrogenases widely occur among globally distributed, numerically abundant and environmentally important microbes
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The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic reprogramming. The … infections cause significant metabolic changes in marine microbes, the answer is no. They refer to the infected … and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the …
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Frequently Asked Questions: Proposal Submission
… submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review … ; click on the call link to see specific details including project types supported, sample/capacity limits, and … should indicate this in the proposal so we can select the project provisionally. If your project makes it successfully …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who … as part of the Early Career Research Program (ECRP). His project, “Characterizing Virus-Driven Alterations of … analysis to better characterize how viruses infect soil microbes and influence how soil ecosystems function. He was …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample … attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to … energy generation and environmental characterization and cleanup. The JGI provides integrated high-throughput …
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Graduate Students Get Thesis Research Opportunity at the JGI
… between 3-12 consecutive months. Their proposed research projects address scientific challenges central to Office of … metabolism, work on which she will expand with her study of microbes in California’s manmade water transport canals. … energy generation and environmental characterization and cleanup. The JGI provides integrated high-throughput …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how … they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The Science The … (DP150100244) and the Australian Antarctic Science program (project 4031). The work in the Hallam Lab was performed …
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