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The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
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Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9.
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in … 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome …
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Doubling Down on Known Protein Families
… it comes to microbial communities, scientists have historically been unable to see beyond the beam — worse, they didn’t even know how big the room is.  A new study  published online Oct. 11, 2023 in  Nature … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… addition to the synthetic biologist’s toolkit: a technique for  c hassis (or strain)-independent  r ecombinase- a … this Lawrence Berkeley National Laboratory (Berkeley Lab) Newscenter story and this piece in  Current Opinion in … bacterial strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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A High‐Throughput Investigation of the Binding Specificity of Carbohydrate‐Binding Modules for Synthetic and Natural Polymers
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Investigating overflow metabolism in heterotrophic cultures of the green alga Chromochloris zofingiensis
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Synthetic Biology Lab
… technologies to the broader community.  We focus our efforts on integrating database mining and sequence design … to improve automated assembly pipelines bringing in new technologies, in particular through adoption of lab … ever-higher levels of throughput. We also develop methods for efficient QA/QC based on next-generation sequencing …
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Uncovering Novel Genomes from Earth’s Microbiomes
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … data publicly available. To acknowledge the efforts of the investigators who had done the sampling, Eloe-Fadrosh … been associated with a host – with 23,000 MAGs. Modeling A New Path for Metagenomics Researchers Building upon these …
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Experimentally-validated correlation analysis reveals new anaerobic methane oxidation partnerships with consortium-level heterogeneity in diazotrophy
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Desert truffle genomes reveal their reproductive modes and new insights into plant–fungal interaction and ectendomycorrhizal lifestyle
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Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages
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