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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … partners. The Science To help better understand how ecosystems work and how healthy they are, a recent data set  outlined in  Scientific Data connects molecular …
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Hiroshi Otani
Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. His … and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied …
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The Switchgrass Genome: Tools and Strategies
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Development of a clostridia-based cell-free system for prototyping genetic parts and metabolic pathways
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Systems Metabolic Engineering of Escherichia coli Improves Coconversion of Lignocellulose‐Derived Sugars
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Examples: Successful LOIs & Submissions
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SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae
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Mechanically induced localisation of SECONDARY WALL INTERACTING bZIP is associated with thigmomorphogenic and secondary cell wall gene expression
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Natural Prodcast Episode 22: Alison Narayan
… so starting from some of the enzymes that we had the most data on and knew the most about, working with my … You can really design your experiments in a way that’s data rich, and you can really just learn so much, which then … with. DAN UDWARY: Yeah. ALISON NARAYAN: And there are other tools that I think are really useful, that again are set up …
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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Yasuo Yoshikuni
… the power of DNA synthesis, strain engineering, and biosystems design for DOE-mission-relevant discovery and … and renewable chemicals, developing genome engineering tools for non-model organisms, modulating microbe-microbe … , 2022 Ke et al., CRISPR-CRAGE enables rapid activation of secondary metabolite biosynthetic gene clusters in bacteria, …
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You Can Move, But You Can’t Hide
… plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature … created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. … for identifying viruses and plasmids. Until now, most other tools have focused on identifying only specific plasmids or …
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