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RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria
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MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources
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Nigel Mouncey
… genetics that started with his education and carried forward into his roles as a senior research scientist at … of novel production organisms and fermentation processes for vitamins, insecticides, fungicides, platform chemicals, cosmetics and new crop traits. Dr. Mouncey …
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Enlarging Windows into Understanding Gene Functions
… Technologies Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first … in the genome by adding tagged transcription factors to a genomic DNA library. “It’s an innovative way to rapidly … proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth Center) drove up and … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Better Genome Editing for Bioenergy
… tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it … , a team of researchers likewise honed their tool before felling their research problem: at a genetic level, how … Y. lipolytica work? The project was a multi-institutional effort led by then-graduate student Cory Schwartz and his …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… who has been appointed the Loretta Purdy Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! Loretta Spencer served as a manyterm … publications that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 … fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved … said, the 1000 Fungal Genomes project, together with other CSP projects, had sequenced over 2,000 fungal genomes. The …
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The GreenCut2 Resource, a Phylogenomically Derived Inventory of Proteins Specific to the Plant Lineage*
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A SNP resource for Douglas-fir: de novotranscriptome assembly and SNP detection and validation
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity … Lab), have taken stock of the current state of microbial genomic biodiversity. Using publicly available genome … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… their collaborations. One review article in the collection, Genomics-enabled analysis of specialized metabolism in … through the JGI DNA synthesis Community Science Program (CSP) Functional Genomics, the system allows scientists to … Institute of Aquatic Science and Technology in September 2021. Robinson stressed that the DNA Synthesis Science …
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