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A Viral Ecogenomics Framework To Uncover the Secrets of Nature’s “Microbe Whisperers”
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Microbes in thawing permafrost: the unknown variable in the climate change equation
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A survey of computational approaches for characterizing microbial interactions in microbial mats
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Gene duplication and genetic innovation in cereal genomes
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The quantitative genetics of gene expression in Mimulus guttatus
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Graduate Students Get Thesis Research Opportunity at the JGI
… of the latest SCGSR award is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship … metabolism, work on which she will expand with her study of microbes in California’s manmade water transport canals. … between the two institutions to help train the next generation workforce.  Since its inception in 2014, more …
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Extracting the Secrets of Secondary Metabolites
… CRAGE-CRISPR combo helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, … is a technique researchers can use to integrate large genetic payloads directly into diverse microbes. Combining CRAGE with CRISPR provides researchers …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric … environments without oxygen through a process called methanogenesis. Methanogenic microorganisms therefore play a … is not limited to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to …
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JGI User Executive Committee Expands
… he’s interested in finding ways to boost visibility of the CSP to encourage more plant proposals and provide feedback … approved CSP New Investigator proposal to understand the genetic basis of fungal community assembly on dead wood … where her group focuses on the interactions between seagrasses, considered marine flowering plants, and their …
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Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… of insects hover just above. Described as a “river of grass” that stretches some 580,000 square miles across … ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome … scientific knowledge, they are also equipping the next generation of scientists that will help shape all of our …
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Simon Roux
… foundational knowledge of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early … microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an Uncultivated Virus Genome … of green sulfur bacteria with long standing virus-host interactions. The ISME Journal 15, 1569–1584. Nayfach et …
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