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A Collaboration to Improve Plant Genome Annotations Across Species
It was developed to improve plant genome annotations at the US Department of Energy (DOE) Joint Genome Institute (JGI)*, a national user facility located at Lawrence Berkeley National … even before this was published, and people regularly contact Jeremy [Schmutz] or me to seek more information on …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… between DOE JGI and UC Merced to promote diversity and inclusion in science and research, two undergraduate students … technology, engineering and math (STEM) fields. At the 2016 CAMP Statewide Undergraduate Research Symposium , held … From the 99 students who attended, representing 9 UC campuses, 10 special merit posters/presenters and 10 honorable …
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Repeated Cis-Regulatory Tuning of a Metabolic Bottleneck Gene during Evolution
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Ancient Algae Reveal Secrets of Plant Evolution
… to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. These evolutionary … in marginal lands and with minimal resources. Enabling the use of non-arable land for biomass production — that can be … for three strains of  Zygnema circumcarinatum . Published  May 2024 in  Nature Genetics by an international research …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… expands the global diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority not harmful to … associated with viruses, while the genomes of large viruses may be only 10 times larger. And yet, while they are found …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … that have integrated into the host genome, these sequences may be tainted by the presence of non-viral genes. Up to … DE-AC02-05CH11231. This work was also supported the grant #2016/23218-0 from São Paulo Research Foundation (FAPESP). …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… be single bacterial cells, visible to the naked eye. The unusual size is notable because bacteria aren’t usually … in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and … can find some TEM pictures and see what look like pepins so maybe people saw them but did not understand what they were. …
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How to Target a Microbial Needle within a Community Haystack
… targeted genomic approach would allow researchers to focus on specific microbes within metagenome samples and … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … , combines multiple techniques and was demonstrated using a specific group of marine bacteria called “Vis6” that …
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Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria
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Tuning of Gene Expression in Clostridium phytofermentans Using Synthetic Promoters and CRISPRi
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How Maize Makes An Antibiotic Cocktail
… a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays ) produces a plethora of antibiotics called zealexins. … scientists have identified at least 15 zealexins, they suspect there are even more to find. Zealexins are produced …
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University of California, Merced Internship Program
Merced students have contributed to the research of numerous JGI scientists. Interns say their experiences allowed them to:  Learn new skills. Experience industry-level work and coding. Receive mentorship, network and …
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