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Phylogenomic analysis of polyketide synthase-encoding genes in Trichoderma
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MAGI: A Method for Metabolite Annotation and Gene Integration
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Identification and Classification of Fungal GPCR Gene Families
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, …
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Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors
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Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication
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Plant Microbial Interactions Group
… single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better … strains, whereby they can modulate host metabolism, gene expression and phenotype. We have recently identified … simiae WCS417. One suggested function of these phage genes is the modulation of their bacterial host to colonize …
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Zymomonas diversity and potential for biofuel production
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Taking Stock of the Known and Unknown Microbial Space
… genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their study assesses … genomes (MAGs) with varying quality scores representing potential genomes, and nearly 44,000 metagenomes. All of the …
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Symbiotic Burkholderia Species Show Diverse Arrangements of nif/fix and nod Genes and Lack Typical High-Affinity Cytochrome cbb3 Oxidase Genes.
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Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
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Model Fern Reveals Insight into DNA Thievery in Ferns
… event that occured some 60 million years ago. Massive gene loss, rampant gene duplications, and even more ancient … richardii marks the first published manuscript of a genome sequence generated through the OGG. For a long time, C-fern … Phytozome . Researchers hope to have demonstrated the potential of ferns as sources of novel genetic material with …
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