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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … in situ functional activities of specific microbial groups within complex communities.  The Microscale Applications … activated cell sorting and non-standard molecular protocols.  Finally, his team utilizes new technologies, …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
…   The JGI is excited to announce the 18 scientists selected for … CSP investigators,” said Tanja Woyke, Deputy Director of JGI’s User Programs. “Many of these projects are large in … Of these 18 scientists, eight have never been involved in a JGI proposal. Three are previous collaborators, though have …
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How to Target a Microbial Needle within a Community Haystack
… would allow researchers to focus on specific microbes within metagenome samples and associate their sequences with … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … being subjected to genome sequencing. Various fixation protocols were also tested as part of the method …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … understanding of multiple forest systems, this work sets up protocols and pipelines that other teams can use around the …
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Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples
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Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi
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Metagenomes, Metatranscriptomes, and Metagenome-Assembled Genomes from Chesapeake and Delaware Bay (USA) Water Samples
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Extensions of BLUP Models for Genomic Prediction in Heterogeneous Populations: Application in a Diverse Switchgrass Sample
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Doubling Down on Known Protein Families
… wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly identify what falls … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of these communities via whole genome sequencing of the samples, without being able to distinguish which gene …
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
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NeLLi — Symposium on New Lineages of Life
… to deciphering metabolic and functional capabilities. Overview of Symposium Goals Metagenomic and single-cell … an ongoing challenge. This symposium series will provide an overview of the bacterial, archaeal and microeukaryote …
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OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging
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