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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … included over 2000 RNA Seq libraries. As I previously mentioned, this is an updateable resource. To demonstrate that, … studied? Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps …
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Building Sphagnum Genomic Resources
… the CSP, researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different … – Sphagnum fallax and S. magellanicum. The draft genome for  S. fallax is already available on the  JGI plant …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located …
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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The CC–NB–LRR protein BSR1 from Brachypodium confers resistance to Barley stripe mosaic virus in gramineous plants by recognising TGB1 movement protein
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can browse the genetic blueprints of …
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JGI@25: The Little Alga That Could
… of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely associated … known as “Chlamy” to those who study it) a powerful reference organism for studying photosynthesis and cell … JGI shows that those sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly known as liverwort, this was done to gain insights into gene families involved in … . The comparative framework provided by these high quality reference genome sequences could help researchers better …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … cycle. Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  … his high school juniors a research project experience and one of his email inquiries, sent through JGI’s  Integrated …
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Evolution of a Fungal Gene Expression Regulator
… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures … development. Summary With the aim of producing at least one reference genome for every family of fungi, the 1000 Fungal …
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Alabama A&M Interns Access An Abundance of Knowledge
In 2024, the DOE Joint Genome Institute and Alabama A&M University piloted an … Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant … part about interning here is the community aspect. Everyone here has also been so very nice and willing to lend a …
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JGI@25
… marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and … help solve energy and environmental challenges.  Commissioned for the JGI’s 25th anniversary, the JGI mural references dozens of iconic JGI contributions to advancing …
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