Results

Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers exploring how to convert …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by … and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating …
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A Step Toward Controlling Soybean Rust
The United States  is the world’s leading soybean producer , and soybeans … yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio … for Agricultural Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … studied? Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where … DNA-SIP for helping identify active micro-organisms within complex communities, and custom software for integrating … al. Mass Spectrometry for Natural Product Discovery. 2020.  Reference Module in Chemistry, Molecular Sciences and …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely associated … known as “Chlamy” to those who study it) a powerful reference organism for studying photosynthesis and cell …
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Busting the Unbreakable Lignin
New evidence shows anaerobic fungi can degrade the hardiest of plant components … of a building or the human skeleton. It’s more complex, and poisons enzymes and the  microbes that make … (The JGI also conducted RNA sequencing and alignment to the reference fungal  genome . The study’s pivotal NMR (nuclear …
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The first complete human genome
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS … Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for … scientific community toward a predictive understanding of complex biological and environmental systems to enable …
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