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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in summer 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal … Associated Microbes and Parasites. Ul-Hasan credits her JGI-UC Merced summer internship for helping lay the …
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FICUS Overview
… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized analysis, the JGI also participates …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Community Science Program
… sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … call is for expansive projects that leverage a range of JGI capabilities, and also requires a Letter of Intent. The New Investigator call is for PIs who have never led a JGI project, and the Functional Genomics call is for …
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Ken Chu
… of analytical tools and user interface components for the IMG family of systems. …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI … and D. Skinner and N.J. 2014. Wright Extreme Data Science. Big Data and Extreme-Scale Computing Conference . … UC CORO …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Uncovering Novel Genomes from Earth’s Microbiomes
… have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … platform. Eloe-Fadrosh noted that it was a nice example of “big-data” mining to gain a deeper understanding of the data …
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Access to Rock Star Scientists
Through the JGI-UC Merced Genomics Internship, graduate students Candace … JGI Mentors : Ben Cole & Axel Visel, Genomics of Plant-Microbial Interactions “The summer internship has further … are generous with their time and like nerding out about the big stuff, well, the little stuff! People hold office hours …
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Neha Varghese
… and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user … and implementation of microservices in conjunction with the IMG platform. …
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How to Target a Microbial Needle within a Community Haystack
… strides in generating genome sequences for members of the microbial world through bulk community sequencing … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Development of this protocol was enabled by the JGI’s  Emerging Technologies Opportunity Program . The ETOP …
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