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… one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for scientific … data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, …

… the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also … to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …

… marine microbes and by extension, the ocean’s capacity to act as a carbon sink. Summary As global temperatures … samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …

Basepairs, A Vision for Integrative and  Collaborative Genome Science” – through early introduction to the resources and disciplines advanced by the JGI, we seek to inspire more students to enter the science, technology, …

A new view into a symbiosis could offer benefits to address climate … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and Henrik Scheller.  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. So, a team of scientists made an ambitious plan to begin to link the plant’s varying traits — height, …

… computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research … methods for reacting subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 … Engagement Lead with a focus on adapting JGI workloads to run on supercomputing hardware and worked closely with …

Congratulations to Susannah Tringe , one of eight scientists and engineers … Tringe, a microbiologist, was recognized for “advances in sequence-based studies of microbial assemblies, revealing … emissions, and water recycling.” Tringe is the interim director of Berkeley Lab’s Environmental Genomics and Systems …

Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, strain engineering, … production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating microbe-microbe …

… for growth yet essential for survival, may now be easier to characterize following a proof-of-concept study in which … Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due … CRAGE (Chassis-independent Recombinase-Assisted Genome Engineering) is a technique researchers can use to …

… 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI … Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … Wang G et al. Chassis-Independent Recombinase-Assisted Genome Engineering Enables Rapid Activation of Biosynthetic …

UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone science … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on … Lineage Specific Conserved Genes in Giant Viruses … Pan-genome Graphs: Approaches for Complete Categorization of …