Results
… and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer … scientific projects. These solutions include large-scale genome variants analyses, next-generation transcriptome de … metagenome binning software … Education … Selected Publications … Software …
Learn more
… to sift and characterize RNA virus sequences. A zoo once offered a coloring book featuring polar bears in winter … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into …
Learn more
… causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce … yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s 2016 Community Science Program portfolio … Research (INRA) proposed sequencing a reference genome for P. pachyrhizi to develop better strategies to …
Learn more
… interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants … (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic … of Cell Identity as an R package … Education … Selected Publications … Software …
Learn more
… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … Molecular Sciences Laboratory (EMSL) and the DOE Joint Genome Institute (JGI)—have selected 11 proposals for … alga Chlamydomonas reinhardtii , one of the JGI’s Flagship genomes. She and her colleagues have generated a …
Learn more
The 11th cohort of JGI-UC Merced interns pick highlights from their summer … This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein Bendall : “It’s great meeting …
Learn more
Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing …
Learn more
The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into …
Learn more
… the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching … summer were: Rida Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with …
Learn more
