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… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …

Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … analogous to the human small intestine; and  Bifidobacterium,  which dwells primarily in the rectum, downstream … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US Department of …

… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …

The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint …

Click the cards below to view downloadable pdfs of previous Progress Reports from the Joint Genome Institute.  … FY20 Progress Report … FY19 Progress Report … FY18 Progress …

Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … means using proteins on its tail fibers to latch onto a specific target on the microbial cell’s membrane. Two … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating …

My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium hybridum . …

… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for … range since 2014 to learn more about the microbial responses and feedbacks to warming through the whole soil …

… computational biologist who spends his days wrangling viral genomes and occasionally remembering to document his code. … just "spicy messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our code would …

Phytozome workshop held during the June 2022 CROPS Conference at the HudsonAlpha Institute for … Phytozome is the Plant Comparative Genomics portal of the Department of Energy Joint Genome Institute, and facilitates accurate and insightful …