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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly identify what falls within … sequencing allows researchers to study the entire genetic makeup of these communities via whole genome …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows … they are, and the roles that they might play in the wild, hasn’t been clear. Now, to answer these questions, a team led … who led the research team and is the head of the Viral Genomics group at the JGI, thinks that if you’re a virus or …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
A special issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what … their collaborations. One review article in the collection, Genomics-enabled analysis of specialized metabolism in …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US … do—can help researchers develop predictive watershed scale models to manage river ecosystems. One application for the … also funded under the RC-SFA at PNNL by DOE BER ESS. Metagenomic and metatranscriptomic sequencing was performed at …
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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data … samples rather than single cells or isolated strains, is easy to generate, but difficult to assemble and interpret. …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
… workshop held during the June 2022 CROPS Conference at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of Energy Joint Genome …
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MGM Workshop at Fisabio Summer School
June 24-28: Module 2/Microbial Genomics & Metagenomics Workshop The workshop is addressed … in this area, by means of theoretical lectures and seminars as well as practical hands-on sessions in bioinformatics and …
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Robert Bowers
Bob uses single-cell genomics and metagenomics to explore how microbes influence people and the …
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Tomas Tyml
Tomas uses traditional cultivation methods along with microscopy and genomics to study endosymbiotic associations within microbial eukaryotes. He hopes to …
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W. Berkeley Kauffman
Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the … of technologies to improve the JGI’s capabilities in the areas of metagenomics, single-particle genomics, and metabolic …
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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric …
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