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Ancient Algae Reveal Secrets of Plant Evolution
… 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Science Foundation (NSF) CAREER award (DBI-1652164, 1933521), the Nebraska Tobacco Settlement Biomedical Research …
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The Surprising Structure of a Shrub Willow Sex Chromosome
A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, … Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … by the National Natural Science Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key …
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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … 18, with the number of factor-gene pairs almost doubling to 399. Two of the 11 sigma factors addressed in the study were …
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IMA genome-F18
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s … enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety …
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Gene Expression: From On-Off Switch to Dial
… to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Facility, is supported under Contract No. DE-AC02-05CH11231. …
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iPHoP: A Matchmaker for Phages and their Hosts
With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by the U.S. Department of Energy …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US Department of … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … or wouldn't,” said Rex Malmstrom, leader of the Microscale Applications group at the JGI, whose team uses a … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like these …
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Jinghua Jenny Huang
Jenny is working on the display and visualization of large amount isolate genomic and metagenomic data stored …
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2023 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global …
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Katherine Louie
… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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