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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a previous … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that … affect pathogenic and symbiotic bacterial interactions with animals and plants, or cause metal corrosion in oil pipes. … at the University of California, Berkeley and the Joint Genome Institute, a DOE Office of Science User Facility, …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many … For the portion of the work conducted by the Joint Genome Institute and the Joint BioEnergy Institute, support …
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Benjamin Cole
… interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants … temperature oscillations throughout the day. At the Joint Genome Institute, Dr. Cole’s research focus has been on … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … high-quality reference sequence of the complex switchgrass genome. The reference genome built off more than a decade of …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Trent Northen
… Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the development and application of advanced mass spectrometry approaches and model … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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JGI on the 2020 Highly Cited Researchers List
… fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by … a consortium that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  … to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples around the …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working … hone science presentation skills, and participate in professional development enrichment activities. For some … Merced internship program was founded in 2014 with the goal of inspiring students to embark on a career in genomics and …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … this collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom …
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