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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Supporting Global Research into Actinomycetes
… The 500 species described within the group are responsible for roughly two-thirds of antibiotics, and a deeper … key to discovering new antiviral medicines and treatments for infectious disease. Streptomycetes are also abundant in … a scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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JGI Workshop at SIMB NP Meeting
… often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters … a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a …
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A Plant Root Atlas for Tracking Developmental Trajectories
… nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of single-cell datasets in plants and provides a foundation for still larger efforts in diverse plant species beyond …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of … Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information …
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DOE Metrics
…     2,208     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write reports, and publish first-author papers, making the data available for future research. Hear from Rekha Seshadri (JGI) and Matt …
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PhycoCosm Tutorial
… the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral … 2019 in Nature Communications , two research teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Benjamin Cole
… interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants … temperature oscillations throughout the day. At the Joint Genome Institute, Dr. Cole’s research focus has been on … plant roots, focusing on genetic components required for effective colonization. In addition, Dr. Cole is …
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Cataloging the Microbes that Manage the Health of River Systems
… Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … States. They also provided multiple access points to the information. The team harnessed a community-science program to … National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols so …
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