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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … Program (CSP 502951, 2016, Population and evolutionary genomics of host–microbiome interactions in Zostera marina …
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Green Algae Reveal One mRNA Encodes Many Proteins
Gene expression in eukaryotes was long held to be monocistronic – that is, a … a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and …
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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science … and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
The Berkeley Lab Biosciences Area Entrepreneurship Program presents… Eyes … Johnston for followup questions.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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A Step Toward Controlling Soybean Rust
The United States  is the world’s leading soybean producer , and soybeans … causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane Metabolism. … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global …
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Extracting the Secrets of Secondary Metabolites
CRAGE-CRISPR combo helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not essential for … survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Gene Expression: From On-Off Switch to Dial
Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science Scientists have … to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene …
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