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… word. The 500 species described within the group are responsible for roughly two-thirds of antibiotics, and a deeper … are also abundant in soil and can be used as biocontrol agents and to promote plant growth. It is the largest … a scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …

… regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the original methanogens were, but they were discovered by genome sequencing, which is a much less biased approach to …

… the field, work at the lab bench, and also do some computational analyses at their desks. As part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the interns were two undergraduate … summer were: Rida Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with …

… Lawrence Livermore National Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots to help process …

… zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …

… high-performance computing resources, an upcoming hackathon led by the Oak Ridge Leadership Computing Facility … (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore applications in the life sciences that can be ported to the GPU …

… Gareth Gillard, Audrey Goeckner, Jennifer Goff, Sarah Gonzalez Henao, Yang Hai, Julia G. Harenčár, Sarah Hu; [Row … Elina Laanto, Rose A. Marks, Daniel Mok, Elise Morrison, Jake Nash, Reuben J. Peters, Morito Sakuma; [Bottom … including metagenomics, metatranscriptomics and genome assembly to investigate microbial and plant …

… Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science … a more nuanced library approach to tuning gene expression in metabolic pathways. Compared to the traditional way, … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …

…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. … led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …

… projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of … Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for … alga  Chlamydomonas reinhardtii , one of the JGI’s Flagship genomes. She and her colleagues have generated a …

… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling … So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put … In this episode: the software evolution that made metagenome assemblies like this possible. …

… free. We accept new projects related to energy and the environment several times a year. A few proposal calls have deadlines coming up – in January, March, and later on in the spring. In this episode, hear proposal tips from … user programs at the JGI, and project manager Miranda Harmon-Smith, who helps shepherd CSP projects along. …