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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years ago, the  Genomes OnLine Database has matured from six projects on a … U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Forming Scientific Connections and Building Community
… This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven graduate students from UC … Mentors: Jessen Bredeson & Albert Wu Project: “ Pangenome de Bruijn Graph Simplification ” Peter Nguyen : …
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Tracking the Origins of Methane-Producing Microbes
… Archaeal Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of methane a year, … Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … and Verstraetearchaeota lineages. The archaeal genome was detected in samples collected by Stephen Quake’s …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to applying artificial … has closed at the U.S. Department of Energy (DOE) Joint Genome Institute, a DOE Office of Science User … Asaf Salamov, Igor Grigoriev Project:  Training new JGI genomes with Tiberius Brandon Imstepf Mentor: Brian Bushnell …
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How to Target a Microbial Needle within a Community Haystack
… complex environmental samples. The Science A team led by researchers at the Max Planck Institute (MPI) for Marine … and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating genome sequences for members of the microbial world through …
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JGIota: Looking Back at Methane-Making Microbes
… fiber, but raising these animals also produces an atmosphere-warming gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea breaking down plant matter. So since 2010, the JGI has supported researchers studying those …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… For the first time, a team has comprehensively described host-virus dynamics in a microbial … lysogeny, they can insinuate themselves inside the host’s genome, living quietly and replicating with their host … researcher at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the … same place they often source their nutrients — the shii tree, a Japanese relative of the oak. These fungi are part of … around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, …
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing libraries …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… as well as material that can be converted to energy, are made up heavily of sphagnum mosses.  New research … change. Researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team from Duke University, …
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell University, and Jana U’Ren (pronounced “you-wren”) of the University of Arizona! …
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Three Join the JGI User Executive Committee
… The JGI User Executive Committee (UEC) recently welcomed three new members earlier this month – Sneha Couvilion of … Santa Barbara. They join eight other JGI users already serving on the UEC – go here to view the full roster …
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