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The JGI Data Portal: Improving User Experience
… JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal … are more broadly applicable to the download processes from the other JGI Portals, as well. “For thousands of … experience and beginning work on the download experience from MycoCosm and PhycoCosm, with the intent of eventually …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), comes in. The JGI is … fostering academia-industry collaborations.” A third story from the issue — Machine learning-based prediction of … to fossil fuels to make hydrocarbon products, ranging from gasoline to furniture polish and even cosmetics. Helped …
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JGI@25: Studying Sorghum’s Survival Skills
… but other important crops as well. In 2009, the JGI sequenced and analyzed the first reference genome for … genome. Sorghum was the second cereal crop with a fully sequenced genome (following rice in 2002) and the first C4 … and Extension Center. 2017: The JGI and collaborators sequence and annotate the Sorghum bicolor reference genome, …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… changing planet. In this short audio production, we’ll hear from Karolina Heyduk, an evolutionary plant biologist at the … Photosynthesis is what allows plants to make their own food from light and air — in particular, the part of the air … stomata to prevent water loss, but that also prevents CO2 from coming into the leaf and it basically starves the …
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Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279T), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia
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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
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User Support
… specific milestones, either by automated emails or emails from your Project Manager. Your Project Manager will also …
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Finding the Fermenters
… recently compiled a list of with more than 8,300 organisms from multiple sources, including the U.S. Department of … of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and the DOE Systems … ruminant guts, sediments, and anaerobic bioreactors. Aside from producing energy that the organisms can use to thrive, …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to applying … mentors, postdoc Yumary Vasquez, was herself a program alum from the 2022 cohort.  The UC Merced interns attended … and Identification of Mitochondrial Plasmids from DNA Sequence Moitrish Majumdar Mentors: Bikash Shrestha, Crysten …
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Supporting Global Research into Actinomycetes
… and the focus of a  recent paper published in  Microbial Genomics .   “Studying actinomyces, especially … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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An Earth Month Look at Sustainability Efforts at the JGI
… And so we’re looking at the overall greenhouse gas impacts from all of our operations,” said Brie Fulton, program … Reaching that goal will mean slashing direct emissions from energy, natural gas and electricity, as well as … and performing services,” Fulton said. These emissions come from the whole lifecycle of materials used — from their …
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