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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental Molecular …
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Trent Northen
Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … Schadt, C., Martin, S., Carrell, A. et al. An integrated metagenomic, metabolomic and transcriptomic survey of Populus … Wang G et al. Chassis-Independent Recombinase-Assisted Genome Engineering Enables Rapid Activation of Biosynthetic …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and … build proteins. What Wint and her mentors discovered in the genomes helped to reinforce Charles Darwin’s “survival of … at the JGI. Previous studies were conducted on one or few genomes, but Wint’s research expands the understanding of …
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Pinning Down a Piece of Photosynthesis
The products of photosynthesis are easy to point out. Plants, algae and cyanobacteria create the air we breathe … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … initial target was a family of proteins that appeared in plants and algae and contained a similar region —  a domain …
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Boosting Small Molecule Production in Super “Soup”
Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … than were noted inside the cell. “One of the huge advantages of the cell-free system is that the cells are no … the first time CRISPR-Cas9 had been used to modify a cell’s genome in order to create lysates with altered metabolic …
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Accelerating Metagenomics Discoveries with Deep Learning
… in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole … biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector …
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JGI Early Career Researchers Featured in mSystems Special Issue
… article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … changing salinity of the environment. ( The annotated algal genome is available on the JGI’s PhycoCosm data portal.) … conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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SPRUCE-ing Up Science
… one of the first students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, … with renowned scientists who were involved in the Human Genome Project, or computational biologists who were …
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Doubling Down on Known Protein Families
… of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire …
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JGI Accepts 17 Proposals for Community Science Program
… (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … international collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently …
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You Can Move, But You Can’t Hide
Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … Resource (IMG/VR) , now with more than 15 million viral genomes. It was also key to developing the first version of … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to …
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