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2023 Progress Report
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Petra Byl
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Neha Varghese
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An Automated Tool for Assessing Virus Data Quality
The microbes that play key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated … first time. Based on the single body part each blind man touches – a tusk, the ear, or the tail – they individually … . CheckV is freely available for download at: http://bitbucket.org/berkeleylab/CheckV . … The work conducted by the …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… information is encoded in DNA, with RNA delivering the instructions inside DNA to the cell, RNA viruses store their … unpublished sequence data, was absolutely critical for the success of this effort and so was the acknowledgement of … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Taking Stock of the Known and Unknown Microbial Space
… over 1.8 million bacterial and archaeal genomes to see how much of their diversity we've actually captured,” said … research areas including agriculture, biofuels and bioproducts, and medicine. Wading through 30 years of sequencing … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… to living on a changing planet. In this short audio production, we’ll hear from Ed Hall, an ecologist at Colorado … being affected by the metals? When metals are introduced, how do they adapt by changing what macromolecules are … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Enlarging Windows into Understanding Gene Functions
… features and functions. Making connections between the structures and functions of the genes encoded in the genome … the initial development of a streamlined workflow that reduces the time and cost associated with this purification … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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When “The Blob” Made It Hotter Under the Water
… rise, so do instances of extreme weather events such as hurricanes and droughts. Another one began in late … was already collecting ocean water samples when The Blob started. The samples were taken up and down the water column … global carbon cycle. Tracking large-scale marine events such as The Blob is difficult, but critical. By 2016, the …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… to living on a changing planet. In this short audio production, we’ll hear from Karolina Heyduk, an evolutionary … prevents CO2 from coming into the leaf and it basically starves the plants.  ALISON:  That’s what might happen for a … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI Announces 2025 New Investigator Portfolio
… of projects, including the genomic dynamics of biofuel-producing fungi, the effects of biochar on rhizosphere … pathways of algae. They will harness JGI capabilities such as metatranscriptomics and environmental DNA sequencing …
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Evolution of a Fungal Gene Expression Regulator
… or G in a genome sequence can lead to changes in protein structures and functions, but the DNA bases themselves can also … to another location in the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in … technologies for producing both reference genomes and epigenomics, researchers are unwrapping complex mechanisms of …
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