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JGI@25: Building a Better Bean
… of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That … the common bean’s nutritional value, providing anywhere from 10-30% of daily protein requirements. It is also an … farmers and a commercial crop for large producers. The team sequenced and assembled a 473-million basepair genome of the …
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Katherine Louie
… techniques, the platform delivers rich metabolite profiles from diverse biological and environmental samples in support … Rocha UN, Shi S, et al. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nat Microbiol. 2018;3: …
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MGM Workshop at Fisabio Summer School 2025
… will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… California (UC), Merced assistant professor Suzanne Sindi from the School of Natural Sciences and started a program … (CAMP) program, a statewide initiative funded by the National Science Foundation (NSF) that supports … Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial Interactions Group who has mentored several of the …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
… Development & Education department of Lawrence Berkeley National Laboratory (Berkeley Lab) hosted a pitch event … faculty members may invite up to two student participants from the faculty member’s home academic institution, one of …
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Promoting the Power of Viral Metagenomics
… DNA or RNA contained in a sample that has been collected from any kind of environment you can think of – animal … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. From these data it is possible to answer a wide variety of …
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Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… all fungi, and found that some of these genes have moved from the mitochondria into the nuclear genome over … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … publicly available fungal nuclear genome assemblies in the National Center for Biotechnology Information's GenBank. …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… Since one of the challenges of developing alternative fuels from plants is the high cost and resource requirements of … from environmental samples — to identify over 27,000 microbial genes. These genes were identified based on their … of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion …
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High quality draft genome sequences of Pseudomonas fulva DSM 17717T, Pseudomonas parafulva DSM 17004T and Pseudomonas cremoricolorata DSM 17059T type strains
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Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens
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Complete Genome Sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T
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