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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Marcel Huntemann
Marcel is in charge of several production pipelines (gene calling, functional annotation and methylomics) that run on microbial genomes and metagenomes. He also works on automating … exchange and assists with large scale computations on R&D projects. …
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The Big Deal About Short Plants
Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping … plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
As set out in the JGI Five-Year Strategic Plan – “Beyond Basepairs, A Vision for Integrative and  Collaborative Genome Science” – through early introduction to the resources and disciplines advanced by the JGI, …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… for our 2025 Community Science Program Annual Call. These projects include cutting-edge research into microbial … mats — to reveal how these systems adapt and contribute to global biogeochemical cycles. Additional … Research (BER) missions in sustainable biofuel and bioproducts production, global carbon and nutrient cycling, and …
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Gene Expression: From On-Off Switch to Dial
Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science … lead to sustainable pathways for making high-value bioproducts including biofuels. In addition, the team says that … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings … and informal networking events. JGI will present both a genome center talk and a tech talk. Stop by the JGI booth to …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have … While a hill of beans may not seem to amount to much, the common bean (Phaseolus vulgaris) is actually a … of the University of Georgia sequenced and analyzed the genome of the common bean. That work was published online …
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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the information technology company … “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to … computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of data, accessible through the …
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Exploring the Diversity of the American Prairie’s Switchgrass
American prairie, switchgrass ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. … cold, etc. — to its genes. The undertaking took shovels, trucks — and more than a decade.  …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At … matching these viral genetic sequences to their hosts is crucial to understanding what these viruses can do. Building … led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational … 2018 Senior Editor: Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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