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Honey Bee Gut Microbiota Divvy Up Dinner
… including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US Department of Energy Joint Genome Institute.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been … Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory, developed a …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings … and informal networking events. JGI will present both a genome center talk and a tech talk. Stop by the JGI booth to …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley … this collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of fungi …
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A Step Toward Controlling Soybean Rust
… yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio … Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better strategies to … rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in 2010.     …
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Extracting the Secrets of Secondary Metabolites
… Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due … CRAGE (Chassis-independent Recombinase-Assisted Genome Engineering) is a technique researchers can use to … Unlocking the power of secondary metabolites can be complicated because the BGCs that produce them cannot be activated …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… Petri dish, the thin vermicelli-like threads floating delicately above the leaf debris are revealed to be single … appointments at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and …
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Gut Fungi: Unexpected Source of Novel Chemicals
… called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy … Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory. More …
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DOE Metrics
…   700.0     8,760     Q1 2026 175 313.081 179% 2,208 2,064 95.4% Q2 2026 175 243.806 139% 2,160 2,112 99.8% Q3 2026 … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … 1.196 124.393 1,880.818 2,100 2208 105 * Q20 bases — indicates good confidence in the assignment of a base. ** Number …
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New Research Sheds Light on Diversity in the Deep Sea
… and the University of Wisconsin-Madison collected 40 samples from five oceanic regions to better understand … Scientists with the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … in hydrothermal vent communities, with possible applications in biogeochemical engineering,  biofuel production …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write reports, and publish first-author papers, … Escobar (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani Maitra (California …
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