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The genomic footprints of wild Saccharum species trace domestication, diversification, and modern breeding of sugarcane
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of Oak Ridge National Laboratory and Elizabeth “Lizzy” … in metagenomics and novel applications for long-read DNA sequencing. As a UEC member, Wilbanks will advocate for …
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Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.)
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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Examining the cause of high inbreeding depression: analysis of whole‐genome sequence data in 28 selfed progeny of Eucalyptus grandis
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Genome-Wide Sequencing of 41 Rice (Oryza sativa L.) Mutated Lines Reveals Diverse Mutations Induced by Fast-Neutron Irradiation
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Amplicon sequencing of ice and water phytoplankton and bacterial communities during an extreme winter in a central Canadian great lake
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… are everywhere — in soil, the sea and, of course, the cells of other organisms. As they infect microbes like … conditions and a specific microbial host to replicate. Sequencing genetic material directly from samples sidesteps … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The … Laboratory, and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … nearly 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed …
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Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution
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Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes
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