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Gene Expression: From On-Off Switch to Dial
Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science … to identify variations of essential genes in metabolic networks that were missed using traditional approaches. This … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At … brings several of these approaches together into the same workflow, then uses a machine-learning model to give its … led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Marcel Huntemann
Marcel is in charge of several production pipelines (gene calling, functional annotation and methylomics) that run on microbial genomes and metagenomes. He also works on automating intra-department data exchange and …
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Training the Next Generation of Talent
… his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … to solve research problems. In Visel’s group, Olmstead worked with postdoctoral fellow Ben Cole on a project …
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JGI on the 2021 Highly Cited Researchers List
Congratulations to the 2021 Highly Cited Researchers at the … during the last decade.” Approximately 6,600 researchers working in 21 fields appear on the list, and those from the … team that combined field data with a reference switchgrass genome to associate climate adaptations with switchgrass …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … how JGI data supports higher education in this JGIota , a Genome Insider podcast minisode.)  “The ultimate target has …
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IMA genome-F18
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JGI Announces 2023 Community Science Program Awardees
Congratulations to the proposers of the 19 proposals selected … Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Laboratory (Berkeley Lab). “We’re very excited to start working with this years’ crop of CSP recipients, over half …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis … sorbed to the clays. Sandy soils are much more likely to work well for metabolomics.  Q:  What tool or method is … (uM etc).  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome … and coordinates the development of the virus and plasmid workflows for the National Microbiome Data Collaborative.  …
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JGI Hosts GPU Hackathon in May
… high-performance computing resources, an upcoming hackathon led by the Oak Ridge Leadership Computing Facility … (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … National Laboratory (ORNL) to make sure our computational workload can leverage future HPC systems – our data and …
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Supercharging SIP in the Fungal Hyphosphere
… stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have … National Laboratory and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … available to request through  the JGI proposal calls . … Work at Lawrence Livermore National Laboratory was conducted …
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