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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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What Happens Underground Influences Global Nutrient Cycles
… one of the following focus topic areas: Biofuels and bioproducts, Biogeochemistry, and Inter-organismal interactions. … proposals selected with four focused on biofuels and bioproducts. For example, Sabeeha Merchant of the University of … omics and computational resources with JGI’s cutting-edge genomics, DNA synthesis and complementary capabilities. …
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JGI@25: Building a Better Bean
While a hill of beans may not seem to amount to much, the common bean (Phaseolus vulgaris) is actually a … crop for small farmers and a commercial crop for large producers. The team sequenced and assembled a 473-million … Phaseolus as a test model quite frequently for R&D in plant genomics, because it is an inbred dicot,” Schmutz explained, …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… transformations.” The JGI’s large-scale call included algal genomics as a focus area, and one of the accepted proposals … the role endosymbiotic bacteria play on mating habits of Mucoromycota fungi, and their effects on these oil-producing species. Many fungi have beneficial symbiotic …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while … said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author on the … experiments between ancestral and recent  B. hybridum accessions produced infertile F1 descendants (first …
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The Expanding Universe of Methane Metabolisms in Archaea
… than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key role in determining the … data provided by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) … in April, which immediately precedes the JGI’s 14th Annual Genomics of Energy & Environment Meeting. Registration for …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… this to untangle which microbes ate the compound and how much they ate.  These analyses provide granular insight into … laborious lab work to analyze samples from one experiment. Starting a  few years ago, researchers can request … Even better, creating comparable data with useful and accessible metadata multiplies these possibilities, and …
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