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Draft genome sequence of Yarrowia lipolytica NRRL Y-64008, an oleaginous yeast capable of growing on lignocellulosic hydrolysates.

Genomic comparison of deep-sea hydrothermal genera related to Aeropyrum, Thermodiscus and Caldisphaera, and proposed emended description of the family Acidilobaceae

Draft genome sequences of Butyrivibrio hungatei DSM 14810 (JK 615T) and Butyrivibrio fibrisolvens DSM 3071 (D1T).

Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.

Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil

Expanded genome and proteome reallocation in a novel, robust Bacillus coagulans strain capable of utilizing pentose and hexose sugars

Draft genome sequence of Mesonia hippocampi DSM 29568T isolated from the brood pouch of a diseased male seahorse.

Whole genome sequence, CAZyme repertoire and sugar metabolic model of the phytopathogenic fungus Kretzschmaria zonata GFP 132

A Chromosome-Scale Genome Assembly of the Flax Rust Fungus Reveals the Two Unusually Large Effector Proteins, AvrM3 and AvrN.

Hiroshi Otani

… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … Otani H, Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 Nov …

From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern

… determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and … were conducted on one or few genomes, but Wint’s research expands the understanding of hundreds of fungal genomes … Relevant Links: Publication: Wint R et al. Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals …

Accelerating Metagenomics Discoveries with Deep Learning

… institutions shared their works-in-progress with 86 participants in an online workshop to harness deep learning for … biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector … samples) with a new tool called MetaGNN (Prashant Pandey of CRD). The workshop was organized by Kristofer …

Lawrence Berkeley National Laboratory is a U.S. DOE Office of Science
national laboratory managed by the University of California.