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IMA genome-F18
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced students this past … as they came onsite. From data carpentry to science communications, their schedules were filled with trainings that … and Exploring Novel BGC Detection Techniques on Fungal Genomes Video Transcript: Emerald Nash : What I’m working on …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … one of the lead organizers of the Viral EcoGenomics & Applications (VEGA) Symposium , which will take place later this … function. He was one of the eight JGI researchers on the 2023 Highly Cited Researchers list, and has appeared on the …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
Research Center One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated … on future collaborations, an entire afternoon was dedicated to small individual workshops. Of common interest is … and Petrus Zwart. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the … genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized quantitative …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… (SIP) has opened vast windows into specific activities catalyzed by microbial communities. By pairing RNA or DNA … swapped for the heavier, non-radioactive isotope Carbon-13, researchers can then safely follow the path of that … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… also request access to the  Biological Small-Angle Neutron Scattering (Bio-SANS) instrument available at Oak Ridge … and guidelines. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed …
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Chomping Toward Better Plastic Recycling
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Uri Neri
… computational biologist who spends his days wrangling viral genomes and occasionally remembering to document his code. …
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Game On: High School Students Drive Everglades Metagenomics Study
… teach a second year A-Level Advanced International Certificate of Education (AICE) Biology class at Florida’s Boca … email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy (DOE) Joint Genome Institute (JGI) , a DOE Office of Science User …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… unique conditions and a specific microbial host to replicate. Sequencing genetic material directly from samples … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … from different ecosystems all over the world, including 3,908 isolate reference DNA viruses and 264,413 …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread …
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