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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
For the first time, a team has comprehensively described host-virus dynamics in … a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … small proportion of the sample’s billions of bacterial and archaeal cells — and detected the virus in 34 hosts or 26 …
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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science … always found among and within poplar trees, and in an effort to understand its influence on the plant, a team of …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … Program , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  …
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Graduate Students Get Thesis Research Opportunity at the JGI
Twice a year, the DOE Office of Science Graduate Student Research … is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s … to answer our most pressing problems. I’m very much looking forward to working with JGI and LBNL scientists and have …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome Institute hosted several UC … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … huge amounts of data. I was excited to work on fungal genomics and the fact that I got to do a project involving …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
P. psychrophila genes drive resilience when salinity fluctuates. The … ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … manage the growth, yield and climate resilience of algae — for potential use as biomass or in biomass conversion to …
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JGI Workshop at SIMB NP Meeting
Jan. 7: New Capabilities to Study Secondary Metabolism   … often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters … Science User Facility, has been developing and applying new genomics capabilities that address these issues. Check the …
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The Case for Conservation
How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science … genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … advances in sequencing technologies applied to the effort. The Impact Found on all continents, including …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and … tolerant CAM plants, Agave deserti and Agave tequilana. BMC Genomics  14, 563. May D, Blow MJ, Kaplan T, McCulley DJ, …
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