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JGI on the 2021 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … team that combined field data with a reference switchgrass genome to associate climate adaptations with switchgrass … of webinars featuring aspects of the Integrated Microbial Genomes & Microbiomes (IMG/M) Nikos Kyrpides was part of an …
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IMA genome-F18
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced students this past … as they came onsite. From data carpentry to science communications, their schedules were filled with trainings that … and Exploring Novel BGC Detection Techniques on Fungal Genomes Video Transcript: Emerald Nash : What I’m working on …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the virus … one of the lead organizers of the Viral EcoGenomics & Applications (VEGA) Symposium , which will take place later this …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
Research Center One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated … on future collaborations, an entire afternoon was dedicated to small individual workshops. Of common interest is … at the University of Duisburg-Essen in Germany in 2024 and 2025.  Participants from the UDE were Alexander …
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the … genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … Boston University ( magna cum laude ) … Serrano et al. 2024.  Spatial co-transcriptomics reveals discrete stages of …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… (SIP) has opened vast windows into specific activities catalyzed by microbial communities. By pairing RNA or DNA … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get into the nitty gritty with the people …
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Chomping Toward Better Plastic Recycling
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Uri Neri
… computational biologist who spends his days wrangling viral genomes and occasionally remembering to document his code. …
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Game On: High School Students Drive Everglades Metagenomics Study
… teach a second year A-Level Advanced International Certificate of Education (AICE) Biology class at Florida’s Boca … email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy (DOE) … made coring devices, then planned and collected from 4 sites with 5 replicates. They extracted the DNA from the …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… unique conditions and a specific microbial host to replicate. Sequencing genetic material directly from samples … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … world, including 3,908 isolate reference DNA viruses and 264,413 computationally identified viral contigs. Since then, …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread …
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