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Exploring the Diversity of the American Prairie’s Switchgrass
… potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. …
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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental Molecular … through a collaborative, peer-reviewed proposal process—enabling researchers worldwide to explore complex …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to our ability to offer … engineering system that allows scientists to conduct genome-wide screens and explore biosynthetic pathway. Thus …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: … I recently caught up with Karolina at the Plant and Animal Genomes, or PAG conference, when in-person meetings were … Karolina’s quest in a future episode of our JGI podcast, Genome Insider. I’m Alison Takemura. See you next time. … …
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A Natural Mechanism Can Turbocharge Viral Evolution
… ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … these DGRs. DGRs were found in single microbial and viral genomes, as well as genomes sampled all at once from the …
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JGI Early Career Researchers Featured in mSystems Special Issue
Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … compounds to link active microbes with specific metabolic processes. A third approach steps away from reconstructing … microbes shape global ecological and environmental processes, especially by modifying host cell metabolism and …
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JGI-UC Merced Interns Share Their 2021 Experiences
Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on … Lineage Specific Conserved Genes in Giant Viruses … Pan-genome Graphs: Approaches for Complete Categorization of …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … changing salinity of the environment. ( The annotated algal genome is available on the JGI’s PhycoCosm data portal.) … conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… structures that enable organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … metabolic capabilities offer insights into how microbial processes might be harnessed for applications including …
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Triggering Morel Fruiting
Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … helpful for studying physiological and biochemical processes driving the fruiting of soil saprotrophic … further field experiments to determine the biochemical processes taking place during the lignocellulose …
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JGI Accepts 17 Proposals for Community Science Program
… (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … international collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently …
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Green Algae Reveal One mRNA Encodes Many Proteins
Laboratory, the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the JGI and EMSL.  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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