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JGI@25: Following Fungi that Pry Apart Plant Polymers
Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and …   Usually, plants have the upper hand against any kind of biomass breakdown. They’ve spent millions of years … standards.  A year later, her team used proteomics, genomics and transcriptomics to discover another advantage …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  … University of Minnesota to establish the Natural Products Genomics Resource Center. To help enable the discovery of … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … senior authors. “It offers us the possibility to explore genomically the whole complex of progenitors and descendant … of polyploidy.” Evaluating Polyploid Genomes in a Pan-genomic Context For the study, partly enabled by the JGI’s  …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a … the microbes there,” said Simon Roux , the Viral Genomics Group Lead at the JGI.  To understand the … Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of viruses in the …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … Phaseolus as a test model quite frequently for R&D in plant genomics, because it is an inbred dicot,” Schmutz explained, …
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Boosting Small Molecule Production in Super “Soup”
… still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have … Rapid Prototyping of Genes and Pathways” at the JGI Annual Genomics of Energy & Environment Meeting on September 1, … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
Learn more
The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … enzymes.” Gribaldo will be speaking on “Exploration of Metagenomic Data to Understand the Diversity and Evolution of … in April, which immediately precedes the JGI’s 14th Annual Genomics of Energy & Environment Meeting. Registration for …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of … genetics expertise and experience as a primarily fungal genomics user, he aims to help align JGI policies with …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to our ability to offer host-engineering for our users,” says JGI Director … as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … — they rely on enzymes that have been evolving for billions of years. However, these enzymes are often loosely … Korea as well as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – … co-localization of JGI and KBase at the Integrative Genomics Building (IGB). Said Michael Brandt of Ray, “You … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Daniel Udwary
… group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in bacteria and fungi. Prior … (1996) … List available on Google Scholar … Education … Publications …
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