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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research has been focused on … data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in …
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Marcel Huntemann
Marcel is in charge of several production pipelines (gene calling, functional annotation and methylomics) that run on microbial genomes and metagenomes. He also works on automating … exchange and assists with large scale computations on R&D projects. …
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The Big Deal About Short Plants
Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science … National Laboratory and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
As set out in the JGI Five-Year Strategic Plan – “Beyond Basepairs, A Vision for Integrative and  Collaborative Genome Science” – through early introduction to the …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
Applications and Analysis for the Future (SFA²F) meeting brings together established and emerging scientists from … and informal networking events. JGI will present both a genome center talk and a tech talk. Stop by the JGI booth to …
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The JGI Data Portal: Improving User Experience
… human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience … “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to …
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JGIota: The Algae Nicknamed ‘Chlamy’
This shorter episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii – that’s … works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other organisms – …
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Exploring the Diversity of the American Prairie’s Switchgrass
… switchgrass ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. So, a team of scientists made an ambitious …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Phytozome and will be available for future single-cell projects.” The Berkeley Lab  Biosciences Area has been …
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Learning to Look
Machine learning approach significantly expands inovirus diversity. To … by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not …
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What Happens Underground Influences Global Nutrient Cycles
EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, … Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for …
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