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ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes
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Tanja Woyke
After studying the mechanism of action of antifungal natural products and their … she deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in … et al. 2016. SAR11 bacteria linked to ocean anoxia and nitrogen loss. Nature 536, 179-183. Ivanova et al. 2014. …
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Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems
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Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2T
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Natural Prodcast Episode 17: Cassandra Quave
… culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … that morning cup of coffee, that is a plant that has a functional activity. It’s a pharmacological agent that acts … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? …
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What Happens Underground Influences Global Nutrient Cycles
… 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … fluctuating environmental conditions. The team aims to functionally link gene families to photosynthesis and …
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by … group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … involves both experimental and computational exploration of uncultivated viral diversity, characterization of …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and …
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Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus
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